BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB034A08SP1|AL429840
(874 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig787 894 0.0
3x_Contig1638 476 e-134
>3x_Contig787
Length = 1880
Score = 894 bits (451), Expect = 0.0
Identities = 458/459 (99%), Gaps = 1/459 (0%)
Strand = Plus / Plus
Query: 417 agctttcatgttgaagacaagttctgctgtgttgggtgcagggttcatgctttggttctc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agctttcatgttgaagacaagttctgctgtgttgggtgcagggttcatgctttggttctc 60
Query: 477 cattcttggtgtctggggtgttcttccaatccatctttccgaattatctcctccagaagc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cattcttggtgtctggggtgttcttccaatccatctttccgaattatctcctccagaagc 120
Query: 537 tagagctttggtctctggtcttgcctatcaattaggtaacttggcttctgccgcttcggt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagagctttggtctctggtcttgcctatcaattaggtaacttggcttctgccgcttcggt 180
Query: 597 cgttatcgaaaacgatttggctgatttgtacccaatcgaatggaactccgca-gtgaagt 655
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 181 cgttatcgaaaacgatttggctgatttgtacccaatcgaatggaactccgcaggtgaagt 240
Query: 656 aacaaacaaggattactctaaagttatggctatcttgactggttccagtgtcatcttcac 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aacaaacaaggattactctaaagttatggctatcttgactggttccagtgtcatcttcac 300
Query: 716 ttttgtcttggtatttgtcggtcacgagaagttccacagagatttatcctctcctcattt 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttttgtcttggtatttgtcggtcacgagaagttccacagagatttatcctctcctcattt 360
Query: 776 gaaatcttatatcgaaagagttgaccaaacggaagaagttgctgctatgacaggttccac 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaaatcttatatcgaaagagttgaccaaacggaagaagttgctgctatgacaggttccac 420
Query: 836 ggccaattctatttcttctaagccaagtgatgatcaatt 874
|||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggccaattctatttcttctaagccaagtgatgatcaatt 459
>3x_Contig1638
Length = 14042
Score = 476 bits (240), Expect = e-134
Identities = 250/252 (99%), Gaps = 1/252 (0%)
Strand = Plus / Minus
Query: 1 atcttatggagattggtttggcctgagactaaatatttcactaaggtgttaaaggctaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atcttatggagattggtttggcctgagactaaatatttcactaaggtgttaaaggctaga 204
Query: 61 caattgatgagagacgatgccattgccaagaacggtggtcaaccattgccaaaattgtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 caattgatgagagacgatgccattgccaagaacggtggtcaaccattgccaaaattgtct 144
Query: 121 ttcaaacaaaaattcgctaacgttaagaaaactgtttctaaatactggttattgttcggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ttcaaacaaaaattcgctaacgttaagaaaactgtttctaaatactggttattgttcggt 84
Query: 181 tacttgattctcttgcttgttggtccaaactacttgacccatgcctctcaagatttgttc 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 83 tacttgattctcttgcttgttggtccaaactacttgacccatgcttctcaagatttg-tc 25
Query: 241 ccaaccatgtta 252
||||||||||||
Sbjct: 24 ccaaccatgtta 13
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6391
Number of Sequences: 1807
Number of extensions: 6391
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 2
length of query: 874
length of database: 10,358,551
effective HSP length: 16
effective length of query: 858
effective length of database: 10,329,639
effective search space: 8862830262
effective search space used: 8862830262
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)